PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087706.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 504aa    MW: 53709.2 Da    PI: 7.4828
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.46.3e-39123234389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++        
  XP_011087706.1 123 PPKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSSLSAPpsksaphs 217
                     6799****************************************************************999866666666664444344445555 PP

             TCP  89 ................k 89 
                                     +
  XP_011087706.1 218 fhsalglahhpyeenfS 234
                     55555555555444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.8E-41127284IPR005333Transcription factor, TCP
PROSITE profilePS5136928.542128182IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MELTDSSSHT NKQQSSSTTS SSSSTIPATT TSSSSQPYHL TPPHLLHRLH GRSPPFISPL  60
HTPSLPPPTA SSPPSASQQL VDASLAIATR SETLIDHPTT SKRPPQQVQA APQGEQQQQP  120
QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG HKSDGETIEW LLQQAEPAII  180
AATGTGTIPA NFSTLNISLR SSGSSLSAPP SKSAPHSFHS ALGLAHHPYE ENFSHMLGFH  240
HHQQQQQPPP HLLQAAQITD TLAAGGSSGG QEETENYLRK RYREDLFKEE GANNSQAEGP  300
SSSPSNKQFK SQNSLQNLQK PQDSAGQSPG SLMRHANMMP AAAMWAVTPA PTSGASGSTF  360
WMLPMTAAAG GGNSAQTLAA ASSTGPSEAA QMWPFATAHG VGNTLQAPLH FMPRFNYPGN  420
LEFQGGRANP LQLGSILMQQ QQQPQQPSQH LGLGVNPAES NLGMLAAINA YSRTGLSMNS  480
ENVEQQHQPQ ATDSDDDGGQ NSSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087706.10.0PREDICTED: transcription factor TCP8
TrEMBLM1CBU21e-160M1CBU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641641e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-54TCP family protein